Compiled volumes and refereed Conference proceedings:

• Hamid Dehghani, Scott C. Davis and Brian W. Pogue
  Diffuse optical and bioluminescence tomography using spectral techniques
  Proceedings of SPIE Vol. 7171 (2009)

• Fredric Leblond, Dax S. Kepshire, Brian W. Pogue, Julia A. O'hara, Hamid Dehghani Subhadra Srinivasan, Niculae Mincu, Mario Khayat, and Michael Hutchins
  Imaging glioma mitochondrial activity in vivo with time-domain FMT/microCT
  Proceedings of SPIE Vol. 7171 (2009)

• Matthew E. Eames, Jia Wang, Brian W. Pogue and Hamid Dehghani
  Wavelength optimization in spectral near-infrared optical tomography
  Proceedings of SPIE Vol. 7171 (2009)

• Scott C. Davis, Summer L. Gibbs-Strauss, Hamid Dehghani, Brian W. Pogue and Keith D. Paulsen
  MRI coupled fluorescence tomography of epidermal growth factor receptor in murine gliomas
  Proceedings of SPIE Vol. 7171 (2009)

• Guan Xu, Charles F. Bunting, Hamid Dehghani, and Daqing Piao
  A Hierarchical spatial priori approach for prostate image reconstruction in rans-rectal optical tomography
  Proceedings of SPIE Vol. 7171 (2009)

• Hamid Dehghani, Brian W. White and Joseph P. Culver
  Depth sensitivity and image reconstruction analysis of high-density imaging arrays for mapping brain function with diffuse optical tomography
  Proceedings of SPIE Vol. 7174 (2009)

• Michael Chu, Alexander D. Klose, Iain B. Styles and Hamid Dehghani
  Frequency domain 3D simplified spherical harmonics approximation: development, validation and implication in bioluminescence tomography
  Proceedings of SPIE Vol. 7174 (2009)

2008

Journal publications

• Matthew E. Eames and Hamid Dehghani
  Wavelength dependence of sensitivity in spectral diffuse optical imaging: effect of normalization on image reconstruction
  Optics Express, Volume 16(22), 17780 (2008)

• Guan Xu, Daqing Piao, Cameron H. Musgrove, Charles F. Bunting, and Hamid Dehghani
  Trans-rectal ultrasound-coupled near-infrared optical tomography of the prostate Part I: Simulation
  Optics Exprss, Volume16(22), 17484 (2008)

• Hamid Dehghani, Scott C. Davis, and Brian W. Pogue
  Spectrally Resolved Bioluminescence Tomography using the Reciprocity Approach
  Medical Physics, Volume 35, Issue 11, 4863-4871 (2008)

• Hamid Dehghani, Matthew E. Eames, Phaneendra K. Yalavarthy, Scott C. Davis, Subhadra Srinivasan, Colin M. Carpenter, Brian W. Pogue and Keith D. Paulsen
  Near Infrared Optical Tomography using NIRFAST: Algorithms for Numerical Model and Image Reconstruction Algorithms
  Communications in Numerical Methods in Engineering, DOI: 10.1002/cnm.1162 (2008)

• Matthew E. Eames, Jia Wang, Brian W. Pogue and Hamid Dehghani
  Wavelength Band Optimisation in Spectral Near-Infrared Optical Tomography Improves Accuracy While Reducing Data Acquisition and Computational Burdon
  JBO, Volume 13(5), 054037 (2008)

• Phaneendra K. Yalavarthy, Daniel R. Lynch, Brian W. Pogue, Hamid Dehghani, and Keith D. Paulsen
  Implementation of a computationally efficient least-squares algorithm for highly under-determined three-dimensional diffuse optical tomography problems
  Med. Phys. 35(5), 1682-1697 (2008)

• Dax kepshire, Scott C. Davis, Hamid Dehghani, Keith D. Paulsen and Brian W. Pogue
  Fluorescence tomography characterization for sub-surface imaging with protoporphyrin IX
  Optics Express 16(12) (2008)

• Scott C. Davis, Brian W. Pogue, Roger Springett, Christoph Leussler, Peter Mazurewitz, Stephen B. Tuttle, Summer L. Gibbs-Strauss, Shudong S. Jiang, Hamid Dehghani and Keith D. Paulsen
  Magnetic resonance coupled fluorescence tomography scanner for molecular imaging of tissue
  Rev. Sci. Inst. 79, (2008)

Compiled volumes and refereed Conference proceedings:

• Hamid Dehghani, Scott C. Davis, and Brian W. Pogue
  Image Reconstruction in Spectrally Resolved 3D Bioluminescence Tomography using the Adjoint Theorem
  Biomedical Optics Topical Meeting on CD-ROM (The Optical Society of America, Washington, DC), March 16-20, (2008)

• Hamid Dehghani, Brian R. White, Benjamin W. Zeff and Joseph P. Culver
  Depth Sensitivity Analysis of high-density imaging arrays for mapping brain function with Diffuse Optical Tomography
  Biomedical Optics Topical Meeting on CD-ROM (The Optical Society of America, Washington, DC), March 16-20, (2008)

• Matthew E. Eames, Brian W. Pogue, and Hamid Dehghani
  Wavelength Optimization in Spectral Near Infrared Tomography
  Biomedical Optics Topical Meeting on CD-ROM (The Optical Society of America, Washington, DC), March 16-20, (2008)

• Brian R. White, Benjamin W. Zeff, Bradley L. Schlaggar, Hamid Dehghani, Joseph P. Culver
  Phase-Encoded Retinotopic Mapping in Humans with DOT
  Biomedical Optics Topical Meeting on CD-ROM (The Optical Society of America, Washington, DC), March 16-20, (2008)

• Colin M. Carpenter, Subhadra Srinivasan, Brian W. Pogue, Shudong Jiang, Hamid Dehghani and Keith D. Paulsen
  3D MR guided NIRS: Optimization of Computation and Breast Interface for In vivo Imaging
  Biomedical Optics Topical Meeting on CD-ROM (The Optical Society of America, Washington, DC), March 16-20, (2008)

• Matthew E Eames, Daqing Piao and Hamid Dehghani
  Source and detector fiber optimization for depth sensitivity in endoscopic near infrared tomography
  Biomedical Optics Topical Meeting on CD-ROM (The Optical Society of America, Washington, DC), March 16-20, (2008)

• Guan Xu, Cameron Musgrove, Charles F. Bunting, Hamid Dehghani, Daqing Piao
  Sagittal-imaging Trans-rectal Optical Tomography Reconstruction with Structural Guidance: Initial Simulative Study
  Biomedical Optics Topical Meeting on CD-ROM (The Optical Society of America, Washington, DC), March 16-20, (2008)

• Matthew E. Eames, Brian W. Pogue, Phaneendra K. Yalavarthy and Hamid Dehghani
  An Efficient Jacobian Reduction Method For Image Reconstruction Using Diffuse Optical Tomography
  Biomedical Optics Topical Meeting on CD-ROM (The Optical Society of America, Washington, DC), March 16-20, (2008)

• Michael K. Chu, Alexander D. Klose and Hamid Dehghani
  Light Transport in Soft Tissue Based on Simplified Spherical Harmonics Approximation to Radiative Transport Equation
  Biomedical Optics Topical Meeting on CD-ROM (The Optical Society of America, Washington, DC), March 16-20, (2008)

• Scott C. Davis, Summer L. Gibbs-Strauss, Hamid Dehghani, Brian W. Pogue, and Keith D. Paulsen
  MRI-coupled fluorescence tomography of murine glioma metabolic activity
  Biomedical Optics Topical Meeting on CD-ROM (The Optical Society of America, Washington, DC), March 16-20, (2008)

2007

Journal publications

• Matthew E. Emaes, Brian W. Pogue, Phaneendra K. Yalavarthy and Hamid Dehghani
  An efficient Jacobian reduction method for diffuse optical image reconstruction
  Optics Express 15(24), 15908 (2007)

• Hamid Dehghani and Manuchehr Soleimani
  Numerical Modelling errors in electrical impedance tomography
  Phys Meas 28, S45-S55, (2007)

• Benjamin W Zeff, Brian R White, Hamid Dehghani, Bradley L Schlaggar and Joseph P Culver
  Retinotopic mapping of adult human visual cortex with high-density diffuse optical tomography
  PNAS 104(29), 12169-12174, (2007)

• Xaomei Song, Brian W. Pogue, Hamid Dehghani, Shudong Jiang, Keith D. Paulsen, and Tor D. Tosteson
  Receiver Operating Characteristic and Location Analysis of Simulated Near-Infrared Tomography Images,
  J. Biomed. Opt. 12(5) 054013 (2007)

• Phaneendra K. Yalavarthy, Brian W. Pogue, Hamid Dehghani, Colin M. Carpenter, Shudong Jiang, and Keith D.Paulsen
  Structural information within regularization matrices improves near infrared diffuse optical tomography
  Opt. Express 15(13), 8043-8058 (2007)

• Andrew Darling, Phaneendra K alavarthy, Marvin M Doyley, Hamid Dehghani and Brian W Pogue
  Interstitial fluid pressure in soft tissue as a result of externally applied contact pressure
  Phys. Med. Biol. 52(14), 4121-4136 (2007)

• Phaneendra K. Yalavarthy, Brian W. Pogue, Hamid Dehghani, and Keith D. Paulsen
  Weight-Matrix Structured Regularization Provides Optimal Generalized Least-Squares Estimate in Diffuse Optical Tomography
  Med. Phys. 34(6), 2085-2098 (2007)

• Scott C. Davis, Hamid Dehghani, Jia Wang, Shudong Jiang, Brian W. Pogue and Keith D. Paulsen
  Image-guided diffuse optical fluorescence tomography implemented with Laplacian-type regularization
  Opt. Express 15(7), 4066-4082 (2007)

• Colin M. Carpenter, Brian W. Pogue, Shudong Jiang, Hamid Dehghani, Xin Wang, Keith D. Paulsen, Wendy A. Wells, Jorge Forero, Christine Kogel, John B. Weaver, Steven P. Poplack, and Peter A. Kaufman
  Image-Guided Optical Spectroscopy provides Molecular-Specific Information In Vivo: MRI-Guided Spectroscopy of Breast Cancer Hemoglobin, Water and Scatterer Size
  Opt. Lett. 32(8), 933-935 (2007)

• Dax S. Kepshire, Scott C. Davis, Hamid Dehghani, Keith D. Paulsen, and Brian W. Pogue
  Sub-Surface Diffuse Optical Tomography can Localize Absorber and Fluorescent Objects but Recovered Image Sensitivity is Non-Linear with Depth
  Applied Optics 46(10) 1669-1678 (2007)

Compiled volumes and refereed Conference proceedings:

• Matthew E Eames, Brian W Pogue, Colin M Carpenter and Hamid Dehghani
  Three dimensional near infrared tomography of the breast
  Proc. SPIE 6629 (2007)

• Hamid Dehghani, Brian W. Pogue, Scott C. Davis, and Michael S. Patterson
  Modeling and image reconstruction in spectrally resolved bioluminescence tomography
  Proc. SPIE 6434, 64340V:1-9 (2007)

• Dax Kepshire, Scott Davis, Hamid Dehghani, Keith D. Paulsen, and Brian W. Pogue
  Challenges in sub-surface fluorescence diffuse optical imaging
  Proc. SPIE 6434, 64340R:1-10 (2007)

• Hamid Dehghani, Colin M. Carpenter, Phaneendra K. Yalavarthy, Brian W. Pogue, and Joseph P. Culver
  Structural a priori information in near-infrared optical tomography
  Proc. SPIE 6431, 64310B:1-7 (2007)

• Andrew L. Darling, Phaneendra K. Yalavarthy, Hamid Dehghani, and Brian W. Pogue
  Interstitial fluid pressure due to externally applied force in breast tissue
  Proc. SPIE 6431, 64310Z:1-10 (2007)

• Colin Carpenter, Subhadra Srinivasan, Brian Pogue, Hamid Dehghani, and Keith D. Paulsen
  A comparison of edge constrained optical reconstruction methods incorporating spectral and MR-derived spatial information
  Proc. SPIE 6431, 64310K:1-10 (2007)

• Scott C. Davis, Hamid Dehghani, Phaneendra K. Yalavarthy, Brian W. Pogue, and Keith D. Paulsen
  Comparing two regularization techniques for diffuse optical tomography Proc. SPIE 6434, 64340X:1-12 (2007)

• Phaneendra K. Yalavarthy, Rajesh Langoju, Brian Pogue, Hamid Dehghani, Abhijit Patil, and Keith Paulsen
  Cramer-Rao estimation of error limits for diffuse optical tomography with spatial prior information
  Proc. SPIE 6434, 643403:1-13 (2007)

• Daqing Piao, Hao Xie, Cameron Musgrove, Charles F. Bunting, Weili Zhang, Guolong Zhang, Ellen B. Domnick-Davidsion, Kenneth E. Bartels, G. Reed Holyoak, Sreenivas N. Vemulapalli, Hamid Dehghani, and Brian W. Pogue
  Near-infrared optical tomography: endoscopic imaging approach
  Proc. SPIE 6431:1-10, 643103 (2007)

• Cameron Musgrove, Charles F. Bunting, Hamid Dehghani, Brian W. Pogue, and Daqing Piao
  Computational aspects of endoscopic (trans-rectal) near-infrared optical tomography: initial investigations
  Proc. SPIE 6434, 643409:1-10 (2007)

2006

Journal publications

• Daqing Piao, Guolong Zhang, Sreenivas N. Vemulapalli, Hamid Dehghani, and Brian W. Pogue
  Near-infrared optical tomography in endoscopy-geometry
  Optics & Photonics News 17(12), 31 (2006). [optics in 2006 special issue]

• Daqin Piao, Hao Xie, Weili Zhang, Jerzy Krasinski, Guolong Zhang, Hamid Dehghani and Brian W. Pogue
  Endoscopic, rapid near-infrared optical tomography
  Optics Letters 31(9), 2876-2878 (2006)

• Xin Wang, Brian W. Pogue, Shudong Jiang, Hamid Dehghani, Xiaomei Song, Subhadra Srinivasan, Ben A. Brooksby, Keith D. Paulsen, Christine Kogel, Steven P. Poplack, and Wendy A. Wells
  Image reconstruction of effective Mie scattering parameters of breast tissue in vivo with near-infrared tomography
  J. Biomed. Opt. 11(4), 041106 (2006)

• Brian W. Pogue, Scott C. Davis, Xiaomei Song, Ben Brooksby, Hamid Dehghani and Keith D. Paulsen
  Image analysis methods for Diffuse Optical Tomography
  J. Biomed. Opt. 11(3) (2006)

• Phaneendra K. Yalavarthy, Hamid Dehghani, Brian W. Pogue and Keith D. Paulsen
  Critical computational aspects of near infrared circular tomographic imaging: Analysis of measurement number, mesh resolution and reconstruction basis
  Optics Expres 14, 6113-6127 (2006)

• Subhadra Srinivasan, Brian W. Pogue, Hamid Dehghani, Frederic Leblond and Xavier Intes
  Data subset algorithm for computationally efficient reconstruction of 3-D spectral imaging in diffuse optical tomography
  Optics Express 14, 5394-5410 (2006)

• Ben Brooksby, Brian W. Pogue, Shudong Jiang, Hamid Dehghani, Subhadra Srinivasan, Christine Kogel, Tor D. Tosteson, John Weaver, Steven P. Poplack and Keith D. Paulsen
  Imaging Breast Adipose and Fibroglandular Tissue Molecular Signatures using Hybrid MRI-Guided Near-Infrared Spectral Tomography
  Proceedings of the National Academy of Sciences 103, 8828-8833 (2006)

• Hamid Dehghani, Scott Davis, Shudong Jiang, Brian Pogue, Keith Paulsen and Michael Patterson,
  Spectrally-Resolved Bioluminescence Optical Tomography
  Optics Letters 31(3) 365-367 (2006)

• Subhadra Srinivasan, Brian W. Pogue, Shudong Jiang, Hamid Dehghani, Christine Kogel, Sandra Soho, Jennifer J. Gibson, Tor D. Tosteson, Steven P. Poplack and Keith D. Paulsen,
  In Vivo Hemoglobin and Water Concentration, Oxygen Saturation, and Scattering Estimates from Near-Infrared Breast Tomography Using Spectral Reconstruction
  Acad. Radiology 13(2) 195-202 (2006)

• Nirmal Soni, Keith D paulsen, Hamid Dehghani and Alex Hartov,
  Finite Element Implementation of Maxwell's Equations for Image Reconstruction in Electrical Impedance Tomography
  IEEE Trans. Med. Img. 25(1) (2006)

Compiled volumes and refereed Conference proceedings:

• Hamid Dehghani, Brian W. Pogue, Ben Brooksby, Subhadra Srinivasan and keith D. Paulsen
  Image reconstruction strategies using dual modality MRI-NIR data
  IEEE International Symposium on Biomedical Imaging: From Nano to Macro (2006)

• Brian W. Pogue, Daqing Piao, Hamid Dehghani, and Keith D. Paulsen
  Demonstration of video-rate diffuse optical tomography in phantoms and tissue
  IEEE International Symposium on Biomedical Imaging: From Nano to Macro (2006)

• Hamid Dehghani, Robert Diplock, Brian W. Pogue, Michael S. Patterson
  A direct linear reonstruction method for spectrally resolved 3D bioluminescence tomography
  Biomedical Optics Topical Meeting on CD-ROM (The Optical Society of America, Washington, DC), March 19-22, (2006)

• Scott C. Davis, Brian W. Pogue, Subhadra Srinivasan, Hamid Dehghani and Keith D. Paulsen
  Development of spectrally-constarined diffuse optical tomography for imaging exogenous contrast agents
  Biomedical Optics Topical Meeting on CD-ROM (The Optical Society of America, Washington, DC), March 19-22, (2006)

• Subhadra Srinivasan, Hamid Dehghani, Brian W. Pogue, Frederic Leblond and Xavier Intes
  Three-dimensional optical imaging using spectral constraints
  Biomedical Optics Topical Meeting on CD-ROM (The Optical Society of America, Washington, DC), March 19-22, (2006)

• Colin Carpenter, Brian W. Pogue, Phaneendra Yalavarthy, Scott Davis, Shudong Jiang, Hamid Dehghani and Keith D. Paulsen
  Analysis of 3-dimensional reconstruction in a MR-guided NIR tomography system
  Biomedical Optics Topical Meeting on CD-ROM (The Optical Society of America, Washington, DC), March 19-22, (2006)

• Dax Kepshire, Summer Gibbs, Scott Davis, Hamid Dehghani, Keith D. Paulsen and Brian W. Pogue
  Diffuse flouroscence tomography analysis of B-scan mode geometry
  Biomedical Optics Topical Meeting on CD-ROM (The Optical Society of America, Washington, DC), March 19-22, (2006)

• Phaneendra K. Yalavarthy, Colin Carpenter, Shudong Jiang, Hamid Dehghani, Brian W. Pogue and Keith D. Paulsen
  Incorproration of MR structural information in diffuse optical tomography using Helmholtz type regularization
  Biomedical Optics Topical Meeting on CD-ROM (The Optical Society of America, Washington, DC), March 19-22, (2006)

2005

Journal publications

• Daqing Piao, Hamid Dehghani, Shudong Jiang, Subhadra Srinivasan and Brian W. Pogue
  Instrument for video-rate near-infrared diffuse optical tomography
  Review of Scientific Instruments, 76, (2005)

• Heng Xu, Brian W. Pogue, Roger Springett and Hamid Dehghani
  Spectral derivative based image reconstruction provides inherent insenstivity to coupling and geometric errors
  Optics Letters 30(21), 2912-2914 (2005)

• Scott C. Davis, Brian W. Pogue, Hamid Dehghani and Keith D. Paulsen,
  Contrast-detail analysis characterizing diffuse optical fluorescence tomography image reconstruction
  JBO letters 10(5), 050501-3 (2005)

• Daqing Piao, Shudong Jiang, Subhadra Srinivasan, Hamid Dehghani and Brian W. Pogue,
  Video-rate near-infrared optical tomography using spectrally encoded parallel light delivery
  Optics Letters 30 (19), 2593-2595 (2005)

• Subhadra Srinivasan, Brian W. Pogue, Ben Brooksby, Shudong Jiang, Hamid Dehghani, Christine Kogel, Steven P. Poplack and Keith D. Paulsen,
  Near-Infrared Characterization of Breast Tumors In Vivo using Spectrally-Constrained Reconstruction
  Technology in Cancer Research & Treatment, 4(5), 513-526 (2005)

• Ben Brooksby, Subhadra Srinivasan, Shudong Jiang, Hamid Dehghani, Brian W. Pogue, Keith D. Paulsen, John Weaver, Christine Kogel and Steven P. Poplack,
  Spectral-prior information improves Near-Infrared diffuse tomography more than spatial-prior
  Optics Letters 30 (15), 1968-1970 (2005)

• Ben Brooksby, Shudong Jiang, Hamid Dehghani, Brian W. Pogue, Keith D. Paulsen,
  Combining near infrared tomography and magnetic resonance imaging to study in vivo breast tissue: implementation of a Laplacian-type regularization to incorporate MR structure
  JBO 10(5), 0515041-10 (2005).

• Subhadra Srinivasan, Brian W Pogue, Shudong Jiang, Hamid Dehghani and Keith D Paulsen,
  Spectrally Constrained Chromophore and Scattering NIR Tomography Improved Quantification and Robustness of Reconstruction
  Applied Optics 44(10) 1858-1869, (2005)

• Hamid Dehghani, Ben Brooksby, Brian W Pogue and Keith D Paulsen,
  Effect of Refractive Index on Near Infrared Tomography of the Breast
  Applied Optics 44(10) 1870-1878, (2005)

• Heng Xu, Roger Springett, Hamid Dehghani, Brian W Pogue, Keith D Paulsen and Jeff F Dunn,
  An MRI coupled Broadband Near Infrared Tomography System for Small Animal Brain Studies
  Applied Optics 44(11), p. 2177-2188 (2005)

• Hamid Dehghani, Nirmal Soni, Ryan Halter, Alex Hartov and Keith D Paulsen,
  Excitation patterns in three-dimensional electrical impedance tomography
  Physiol. Meas. 26 S185-S197 (2005)

Compiled volumes and refereed Conference proceedings:

• Subhadra Srinivasan, Brian W Pogue, Shudong Jiang, Hamid Dehghani and Keith D Paulsen,
  Spectrally Constrained NIR tomography for breast Imaging: Simulations and Clinical Results
  Proceedings of SPIE 5693, (2005)

• Phaneendra K Yalavarthy, Hamid Dehghani, Brian W Pogue and Keith D Paulsen,
  Measurement optimization for Near-Infrared optical tomography
  Proceedings of SPIE 5693, (2005)

• Ben Brooksby, Subhadra Srinivasan, Brian W Pogue, Shudong Jiang, Hamid Dehghani, Christine Kogel, John Weaver, Steven Poplack, Justin D Pearlman and Keith D Paulsen
  Quantifying adipose and fibroglandular breast tissue properties using MRI-guided NIR tomography
  Proceedings of SPIE 5693, (2005)

2004

Journal publications

• Heng Xu, Brian W. Pogue, Hamid Dehghani, Keith D. Paulsen, Roger Springett and Jeff F. Dunn,
  Absorption and scattering imaging of tissue with steady-state second-differential spectral-analysis tomography
  Optics letters 29(17) 2043-2045 (2004)

• Ben Brooksby, Shudong Jiang, Christine Kogel, Marvin Doyley, Hamid Dehghani, John B Weaver, Steven P Poplack, Brian W Pogue and Keith D Paulsen,
  Magnetic Resonance Guided Near Infrared Tomography of the Breast
  Rev. Sci. Inst. 75 5262-5270 (2004)

• B. W. Pogue, S. Jiang, H. Dehghani, C. Kogel, S. Soho, S. Srinivasan, X. Song, S. P. Poplack, and K. D. Paulsen,
  Characterization of Hemoglobin, Water and NIR Scattering in Breast Tissue: Analysis of inter-subject variability and menstrual cycle changes relative to lesions
  JBO, 9(3) 541-552, (2004)

• S. Srinivasan, B. W. Pogue, H. Dehghani, S. Jiang, X. Song and K. D. Paulsen,
  Improved Quantification of Small Objects in Near-Infrared Diffuse Optical Tomography
  JBO 9, 1161-1171, (2004)

• H. Dehghani, M. M. Doyley, B. W. Pogue, S. Jiang, J. Geng and K. D. Paulsen,
  Breast deformation modeling for image reconstruction in near infrared optical tomography
  Phys. Med. Biol. Volume 49(7) pp 1131-1146 (2004)

• X. Song, B. W. Pogue, s. Jiang, M. M. Doyley, H. Dehghani, T. D. Tosteson, K. D. Paulsen,
  Automated Region Detection Based Upon Contrast To Noise Ratio in Near-Infrared Tomography,
  Applied Optics 43(5) 1053-1062, (2004)

Compiled volumes and refereed Conference proceedings:

• Hamid Dehghani, Brian W. Pogue, Marvin M. Doyley, Jason Geng, Keith D. Paulsen,
  Breast deformation in near infrared optical tomography
  In Biomedical Topical Meetings on CD-ROM (The Optical Society of America, Washington, DC) (2004)

• Brian Pogue, Shudong Jiang, Subhadra Srinivasan, Xiaomei Song, Hamid Dehghani, Keith Paulsen, Tor Tosteson, Christine Kogel, Sandra Soho, Steven P. Poplack,
  Near-infrared scattering spectrum differences between benign and malignant breast tumors measured in vivo with diffuse tomography
  In Biomedical Topical Meetings on CD-ROM (The Optical Society of America, Washington, DC) (2004)

• Heng Xu, Hamid Dehghani, Brian W. Pogue, Keith D. Paulsen, Roger Springett, Jeff F. Dunn,
  Optical tomography system based on second-differential spectroscopy for small animal brain study
  In Biomedical Topical Meetings on CD-ROM (The Optical Society of America, Washington, DC) (2004)

• Ben A. Brooksby, Shudong Jiang, Gordon Ehret, Hamid Dehghani, Brian W. Pogue, Keith D. Paulsen,
  Development of a system for simultaneous MRI and Near-infrared diffuse tomography to diagnose breast cancer
  In Biomedical Topical Meetings on CD-ROM (The Optical Society of America, Washington, DC) (2004)

• Subhadra Srinivasan, Brian W. Pogue, Hamid Dehghani, Shudong Jiang, Xiaomei Song, Keith D. Paulsen,
  Effect of image reconstruction bias upon spectroscopy-based quantification of chromophores in nearinfrared tomography
  In Biomedical Topical Meetings on CD-ROM (The Optical Society of America, Washington, DC) (2004)

2003

Journal publications

• S. Srinivasan, B. W. Pogue, S. Jiang, H. Dehghani, C. Kogel, S. Soho, J. J. Gibson, T. D. Tosteson, S. P. Poplack, K. D. Paulsen,
  Interpreting Hemoglobin and Water Concentration, Oxygen Saturation and Scattering Measured In Vivo by Near-Infrared Breast Tomography
  PNAS vol 100 no 21 pp 12349-12354 (2003)

• A. P. Bagshaw, A. D. Liston, R. H. Bayford, A. Tizzard, A. P. Gibson, A. T. Tidswell, M. K. Sparkes, H. Dehghani, C. D. Binnie and D. S. Holder,
  Electrical impedance tomography of human brain function using reconstruction algorithms based on the finite element method
  Neuroimage 20, pp 752-764 (2003)

• H. Dehghani, B. Brooksby, K. Vishwanath, B. W. Pogue and K. D. Paulsen,
  The effects of internal refractive index variation in near infrared optical tomography: A finite element modeling approach
  Phys. Med. Biol. Vol 48 pp 2713-2727 (2003)

• N. K. Soni, H. Dehghani, A. Hartov and K. D. Paulsen,
  A novel data calibration scheme for electrical impedance tomography
  Physiol. Meas. Volume 24, Number 2, (2003)

• B. Brooksby, H. Dehghani, B. W. Pogue and K. D. Paulsen,
  Near infrared (NIR) tomography breast image reconstruction with a priori structural information from MRI: algorithm development for reconstructing heterogeneities
  IEEE Journal of Selected Topics in Quantum Electronics on Lasers in Medicine and Biology, 9(2) pp199-209 (2003)

• H. Dehghani, B. W. Pogue, J. Shudong, B. Brooksby, and K. D. Paulsen,
  Three Dimensional Optical Tomography: Resolution in Small Object Imaging
  Applied Optics, Volume 42 No. 18 3117-3128, (2003)

• H. Dehghani, B. W. Pogue, S. P. Poplack, and K. D. Paulsen
  Multiwavelength Three Dimensional Near Infrared Tomography of the Breast: Initial Simulation, Phantom and Clinical results
  Applied Optics, Volume 42, Issue 1, 135-145 (2003)

• H. Xu, H. Dehghani, B. W. Pogue, R. Springett, K. D. Paulsen and J. F. Dunn,
  Near Infrared Imaging in the Small Animal Brain: Optimization of Fiber Positions
  JBO, Volume 8, Issue 1, 102-110, (2003)

Compiled volumes and refereed Conference proceedings:

• S. Srinivasan, B.W. Pogue, S. Jiang, H. Dehghani and K. D. Paulsen,
  Validation of Hemoglobin and Water Molar Absorption Spectra in Near-Infrared Diffuse Optical Tomography,
  Presented at proceedings of spie 4955, (2003)

• X. Song, B. W. Pogue, M. M. Doyley, H. Dehghani, S. Jiang, T. D. Tosteson, S. P. Poplack, K. D. Paulsen,
  Automated Region Detection In Near-Infrared Breast Imaging Based Upon Contrast To Noise Ratios,
  Presented at proceedings of spie 4955, (2003)

• C. Sheng, B. W. Pogue, H. Dehghani, J. A. O'Hara, and P. Jack Hoopes,
  Numerical Light Dosimetry in Murine Tissue: Analysis of tumor curvature and angle of incidence effects upon fluence in the tissue,
  Presented at proceedings of spie 4952, (2003)

• H. Xu, H. Dehghani, B. W. Pogue, R. Springett, K. D. Paulsen and J. F. Dunn,
  Feasibility of NIR tomographic reconstruction with multispectral continuous wave data by mapping into frequency domain data,
  Presented at proceedings of spie 4955, (2003)

• H. Dehghani, B. W. Pogue, S. Jiang, S. Poplack and K. D. Paulsen,
  Optical images from Pathophysiological signals within breast tissue using three-dimensional near-infrared light,
  Presented at proceedings of spie 4955, (2003)

• B. Brooksby, H. Dehghani, K. Vishwanath, B. W. Pogue and K. D. Paulsen,
  Internal refractive index changes affect light transport in tissue,
  Presented at proceedings of spie 4955, (2003)

2002

• H. Xu, H. Dehghani, B. W. Pogue, K. D. Paulsen, and J. F. Dunn,
  Optimization of optical fiber position in nir imaging of the rat cranium,
  OSA Biomedical Topical Meetings, OSA Technical Digest, (Optical Society of America, Washington DC), (2002)

• S. Srinivasan, B. W. Pogue, S. Jiang, H. Dehghani, S. P. Poplack, and K. D. Paulsen,
  Hemoglobin oxygen saturation tomography: Calibration in phantom studies and patient data analysis,
  OSA Biomedical Topical Meetings, OSA Technical Digest, (Optical Society of America, Washington DC), (2002)

• A. Gibson, H. Dehghani, R. M. Yusof, E. M. C. Hillman, J. C. Hebden, M. Schweiger, S. R. Arridge, and D. T. Delpy,
  Optical tomography of a realistic head-shaped phantom,
  OSA Biomedical Topical Meetings, OSA Technical Digest, (Optical Society of America, Washington DC), (2002)

• H. Dehghani, B. W. Pogue, and K. D. Paulsen,
  3-dimensional optical tomography: Modeling for imaging in the female breast,
  OSA Biomedical Topical Meetings, OSA Technical Digest, (Optical Society of America, Washington DC), (2002)

• B. Brooksby, H. Dehghani, B. W. Pogue, and K. D. Paulsen,
  Near infrared tomography image reconstruction with a priori structural information from MRI for female breast tumor detection: Algorithm development,
  OSA Biomedical Topical Meetings, OSA Technical Digest, (Optical Society of America, Washington DC), (2002)

2001

• Dehghani, H, and Delpy, DT
  Linear single step image reconstruction in the presence of non-scattering regiond
  Journal of the Optical Society of America A, 19(6) 1162-1171 (2001)

• Hillman, EMC, Hebden, JC, Schweiger, M, Dehghani, H, Schmidt, FEW, Delpy, DT and Arridge, SR
  Time Resolved Optical Tomography of the Human Forearm
  Phys. Med. Biol. 46(4) 1117-1130 (2001)

• Hebden, JC, Veenstra, H, Dehghani, H, Hillman, EMC, Schweiger, M, Arridge, SR, and Delpy, DT
  Three dimensional time-resolved optical tomography of a conical breast phantom
  Applied Optics, 40(19) 3278-3287 (2001)

• Riley, JD, Arridge, SR, Chrysanthou, Y, Dehghani, H, Hillman, EMC, and Schweiger M
  The radiosity diffusion model in 3D
  Proceedings SPIE/OSA of European Conferences on Biomedical Optics (2001)

• Hillman, E. M. C, Dehghani, H, Hebden, J. C, Arridge, S. R, Schweiger, M, Delpy, D. T.
  Differential imaging in heterogeneous media: limitations of linearization assumptions in optical tomography
  Proceedings of SPIE Vol. 4250 (2001)

• Dehghani, H, Hillman, EMC, Schweiger, M, Arridge, SR, and Delpy, DT
  Optical Tomography: effects of incomplete structural a-priori knowledge in image reconstruction
  Proceedings of SPIE Vol. 4250 (2001)

2000

• Riley, J, Dehghani, H, Schweiger, M, Arridge, SR, Ripoll J, and Nieto-Vesperinas, M
  3D Optical Tomography in the Presence of Void Regions
  Optics Express, 7(13) 462-467 (2000)

• Ripoll, J, Arridge, SR, Dehghani, H, and Nieto-Vesperinas, M
  Boundary conditions for light propagation in diffusive media with non-scattering regions
  Journal of the Optical Society of America A 17(9) 1671-1681 (2000)

• Ono, M, Kashio, Y, Schweiger, M, Dehghani, H, Arridge, SR, and Okada, E
  Topographic distribution of photon measurement density functions on the brain surface by hybrid radiosity-diffusion method
  Optical Review, Special issue on Optical Tomography and Topography in Japan 7(9) 426-431 (2000)

• Hillman, EMC, Hebden, JC, Schmidt, FEW. Arridge, SR, Schweiger, M, Dehghani, H, and Delpy, DT
  Calibration techniques and datatype extraction for time-resolved optical tomography
  Review of Scientific Instruments 71(9), 3415-3427 (2000)

• Schmidt, FEW, Hebden, JC, Hillman, EMC, Fry, ME, Schweiger, M, Dehghani, H, and Delpy DT
  Multiple slice imaging of a tissue-equivalent phantom using time-resolved optical tomography
  Applied Optics 39, 3380-3387 (2000)

• Dehghani, H, and Delpy, DT
  Near infrared spectroscopy of the adult head: the effect of scattering and absorbing obstructions in the CSF layer upon light distribution in the tissue
  Applied Optics 39(25) 4721-4729 (2000)

• Dehghani, H, Arridge, SR, Schweiger, M, and Delpy, DT
  Optical tomography in the presence of void regions
  Journal of the Optical Society of America A 17(9) 1659-1670 (2000)

• Arridge, SR, Hebden, JC, Schweiger, M, Schmidt, FEW, Fry, ME, Hillman, EMC, Dehghani, H, and Delpy, DT
  A method for 3D time-resolved optical tomography
  International Journal for Imaging Systems and Technology 11, 2-11 (2000)

• Arridge, SR, Dehghani, H, Schweiger, M, and Okada, E
  The finite element model of the propagation of light in scattering media: A direct method for domains with nonscattering regions
  Medical Physics 27(1), 252-264 (2000)

• Dehghani, H, Arridge, SR, Schweiger, M, and Delpy, DT
  Image Reconstruction in the presence of void regions
  Biomedical topical Meetings, OSA, Technical Digest (Optical Society of America, Washington DC) 351-353 (2000)

1999

• Dehghani, H, Delpy, DT, and Arridge, SR
  Photon migration in non-scattering tissue and the effects on image reconstruction
  Physics in Medicine and Biology 44(12), 2897-2906 (1999)

• Dehghani, H,Barber, D, Basarab-Horwath, I
  Incorporating a-priori anatomical information into image reconstruction in electrical impedance tomography
  Physiological Measurements 20(1) 87 - 102 (1999)

1998

• Basarab-Horwath, I, Dehghani, H
  Computer modelling in electrical impedance tomography
  Nondestr. Test. Eval, 14 163-172 (1998)