Modelling with MATLAB
Location: Mech. Engi.
B24
Time: 13:00pm Wednesdays and 9:00am
Thursdays
Slides/handouts/source
codes:
Lecture
1: Introduction to
computational modelling with MATLAB. Slides and
handout
Lecture
2: Introduction to
dynamical system modelling. Slides and handout
Lecture
3: Introduction to
MATLAB programming: Fundamentals. Slides and handout
Lecture
4: Introduction to
MATLAB programming: Advanced topics. Slides and
handout (Source code for Lecture 3&4)
Lecture
5: Ordinary
Differential Equations (ODE) in MATLAB. Slides
and handout
Lecture
6: Modelling
Predator-Prey Interactions with ODE. Slides and
handout (Source code for Lecture
5&6)
Lecture
7: Analysis of ODE
models with MATLAB. Slides and handout (Source code for plotting 3D phase plan )
Note: You
can download PPlan at: http://math.rice.edu/~dfield/
Lecture 8&9:
Bifurcation and
chaos. Slides and handout (Source code for Lecture
8&9)
Lecture
11: Modelling
biological oscillations. Slides (Source code for Lecture 11)
Lecture
12: Modelling mass
action kinetics. Slides (Source code for Lecture 12)
Lecture
13&14: Modelling
with cellular automata. Slides
(Source
code for Lecture 13&14)
Lecture
15&16: Agent-based
modelling using MATLAB. Slides (Source code for
Lecture 15)
Lecture
17&18: Data-driven
modelling using MATLAB. Slides
(Source
code for Lecture 17&18)
Lecture
19: Guest Lecture:
Using Simulation and Statistical Techniques to Explore Lymphoid Tissue
Organogenesis. Slides
Lecture
20: Model Parameter
Estimation. Slides
(Source
code for Lecture 19)
Lecture
21: Network models. Slides
Cytoscape or Gephi for complex
network visualisation and analysis
Lecture
22: Revision
lesson
Continuous Assessment: Deadline extension: 15th March
12:00
Click here for Continuous Assessment
instruction
Please
submit your report and source code via the coursework submission system:
https://www.cs.bham.ac.uk/internal/students/submission/
Alternative,
you can also email me your report and source code.