Simultaneous structure discovery and parameter estimation in gene networks using a multi-objective GP-PSO hybrid approach

Created by W.Langdon from gp-bibliography.bib Revision:1.3872

@Article{Cai:2009:IJBRA,
  title =        "Simultaneous structure discovery and parameter
                 estimation in gene networks using a multi-objective
                 {GP}-{PSO} hybrid approach",
  author =       "Xinye Cai and Praveen Koduru and Sanjoy Das and 
                 Stephen M. Welch",
  journal =      "International Journal of Bioinformatics Research and
                 Applications",
  year =         "2009",
  month =        "11 " # jun,
  volume =       "5",
  number =       "3",
  pages =        "254--268",
  keywords =     "genetic algorithms, genetic programming, gene
                 regulatory networks, PSO, particle swarm optimisation,
                 multi-objective optimisation, Bioinformatics, structure
                 discovery, parameter estimation, gene networks, plant
                 genes, plant flowering times, gene expressions",
  ISSN =         "1744-5493",
  URL =          "http://www.inderscience.com/link.php?id=26418",
  DOI =          "doi:10.1504/IJBRA.2009.026418",
  publisher =    "Inderscience Publishers",
  abstract =     "This paper presents a hybrid algorithm based on
                 Genetic Programming (GP) and Particle Swarm
                 Optimisation (PSO) for the automated recovery of gene
                 network structure. It uses gene expression time series
                 data as well as phenotypic data pertaining to plant
                 flowering time as its input data. The algorithm then
                 attempts to discover simple structures to approximate
                 the plant gene regulatory networks that produce model
                 gene expressions and flowering times that closely
                 resemble the input data. To show the efficacy of the
                 proposed approach, simulation results applied to
                 flowering time control in Arabidopsis thaliana are
                 demonstrated and discussed.",
}

Genetic Programming entries for Xinye Cai Praveen Koduru Sanjoy Das Stephen M Welch

Citations