An Evolving Automaton for RNA Secondary Structure Prediction

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  author =       "Carlos A. {Del Carpio M.} and Mohamed Ismael and 
                 Eichiro Ichiishi and Michihisa Koyama and 
                 Momoji Kubo and Akira Miyamoto",
  title =        "An Evolving Automaton for RNA Secondary Structure
  booktitle =    "Proceedings of the 2006 IEEE Congress on Evolutionary
  year =         "2006",
  editor =       "Gary G. Yen and Lipo Wang and Piero Bonissone and 
                 Simon M. Lucas",
  pages =        "4533--4540",
  address =      "Vancouver",
  month =        "6-21 " # jul,
  publisher =    "IEEE Press",
  keywords =     "genetic algorithms, genetic programming",
  ISBN =         "0-7803-9487-9",
  DOI =          "doi:10.1109/IJCNN.2006.247018",
  size =         "8 pages",
  abstract =     "Conventional methods for RNA 2D structure prediction
                 search for minimal free energy structures. RNA's,
                 however, RNA's do not always adopt global minimum
                 structures. Rather, their structure is the result of
                 the folding pathway followed by the structure in
                 nature, which adopts sub-optimal folds occurring along
                 the pathway. Our algorithm consists of an automaton
                 that generates RNA structures by searching for optimal
                 folding pathways. The automaton is endowed of
                 operations to travel throughout the hyperspace of
                 conformers embedded in a base pairing matrix. Using
                 genetic programming it evolves optimising its ability
                 to find optimal pathways and finally 2D structures.
                 Comparing the evolving automaton with conventional
                 methods shows its potential.",
  notes =        "WCCI 2006 - A joint meeting of the IEEE, the EPS, and
                 the IEE.

                 IEEE Catalog Number: 06TH8846D",

Genetic Programming entries for Carlos Adriel Del Carpio Mohamed Ismael Eichiro Ichiishi Michihisa Koyama Momoji Kubo Akira Miyamoto