Which is faster: Bowtie2GP $>$ Bowtie $>$ Bowtie2 $>$ BWA

Created by W.Langdon from gp-bibliography.bib Revision:1.3872

@InProceedings{Langdon:2013:GECCOlb,
  author =       "W. B. Langdon",
  title =        "Which is faster: {Bowtie2GP} $>$ {Bowtie} $>$
                 {Bowtie2} $>$ {BWA}",
  booktitle =    "GECCO 2013 Late breaking abstracts workshop",
  year =         "2013",
  editor =       "Francisco Luna",
  keywords =     "genetic algorithms, genetic programming, automatic
                 software re-engineering, SBSE, double-ended DNA
                 sequence, Solexa nextgen NGS, sequence query,
                 Smith-Waterman, Bowtie2GP, fuzzy string matching, Homo
                 sapiens genome reference consortium GRCh37.p5
                 h_sapiens_37.5_asm, IP29",
  pages =        "1741--1742",
  month =        "6-10 " # jul,
  organisation = "SIGEVO",
  organisation = "SIGEVO",
  address =      "Amsterdam, The Netherlands",
  URL =          "http://www.cs.ucl.ac.uk/staff/W.Langdon/ftp/papers/Langdon_2013_GECCOlb.pdf",
  DOI =          "doi:10.1145/2464576.2480772",
  publisher =    "ACM",
  publisher_address = "New York, NY, USA",
  isbn13 =       "978-1-4503-1964-5",
  abstract =     "We have recently used genetic programming to
                 automatically generate an improved version of
                 Langmead's DNA read alignment tool Bowtie2 [RN/12/09,
                 Sect.\ 5.3]. We find it runs more than four times
                 faster than the Bioinformatics sequencing tool (BWA)
                 currently used with short next generation paired end
                 DNA sequences by the Cancer Institute, takes less
                 memory and yet finds similar matches in the human
                 genome.",
  notes =        "Based on \cite{Langdon:RN1303}
                 http://arxiv.org/abs/1301.5187 See also
                 \cite{Langdon:2013:ieeeTEC} \cite{Langdon:RN1209} Also
                 known as \cite{Langdon:2013:GECCOcompa} \cite{2480772}
                 Distributed at GECCO-2013.",
}

Genetic Programming entries for William B Langdon

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