Inference of Gene Expression Networks Using Memetic Gene Expression Programming

Created by W.Langdon from gp-bibliography.bib Revision:1.4340

  author =       "Armita Zarnegar and Peter Vamplew and 
                 Andrew Stranieri",
  title =        "Inference of Gene Expression Networks Using Memetic
                 Gene Expression Programming",
  booktitle =    "Thirty-Second Australasian Computer Science Conference
                 (ACSC 2009)",
  series =       "CRPIT",
  volume =       "91",
  pages =        "17--23",
  year =         "2009",
  editor =       "Bernard Mans",
  address =      "Wellington, New Zealand",
  keywords =     "genetic algorithms, genetic programming, gene
                 expression programming, hill climbing, Differential
                 Equations, Gene Networks, Evolutionary Algorithm, Gene
                 expression Profile, Microarray data",
  publisher =    "ACS",
  URL =          "",
  abstract =     "In this paper we aim to infer a model of genetic
                 networks from time series data of gene expression
                 profiles by using a new gene expression programming
                 algorithm. Gene expression networks are modeled by
                 differential equations which represent temporal gene
                 expression relations. Gene Expression Programming is a
                 new extension of genetic programming. Here we combine a
                 local search method with gene expression programming to
                 form a hill climbing algorithm in order to find not
                 only the system of differential equations but also fine
                 tune its constant parameters. The effectiveness of the
                 proposed method is justified by comparing its
                 performance with that of conventional genetic
                 programming applied to this problem in previous
  notes =        "School of Information Technology and Mathematical
                 Sciences, University of Ballarat, P.O. Box 663,
                 Ballarat, Victoria, Australia


Genetic Programming entries for Armita Zarnegar Peter Vamplew Andrew Stranieri